Papers - KATAYAMA Kota

Structural basis for the allosteric modulation of rhodopsin by nanobody binding to its extracellular domain Reviewed International coauthorship

A. Wu, D. Salom, J. D. Hong, A. Tworak, K. Watanabe, E. Pardon, J. Steyaert, H. Kandori, K. Katayama*, P. D. Kiser*, K. Palczewski*

Nat. Commun   14 ( 1 )   5209   2023.09

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DOI： 10.1038/s41467-023-40911-9

Structural basis for ion selectivity in potassium-selective channelrhodopsins Reviewed International coauthorship

S. Tajima, Y. S. Kim, M. Fukuda, Y. Jo, P. Y. Wang, J. M. Paggi, M. Inoue, E. F. X. Byrne, K. E. Kishi, S. Nakamura, C. Ramakrishnan, S. Takaramoto, T. Nagata, M. Konno, M. Sugiura, K. Katayama, T. E. Matsui, K. Yamashita, S. Kim, H. Ikeda, J. Kim, H. Kandori, R. O. Dror, K. Inoue, K. Deisseroth*, H. E. Kato*

Cell   186 ( 20 )   4325 - 4344   2023.09

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DOI： 10.1016/j.cell.2023.08.009

Investigating the Mechanism of Photoisomerization in Jellyfish Rhodopsin with the Counterion at an Atypical Position Reviewed

S. Inukai, K. Katayama*, M Koyanagi, A. Terakita, H. Kandori*

Journal of Biological Chemistry   299 ( 6 )   104726   2023.05

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DOI： 10.1016/j.jbc.2023.104726

Phototrophy by antenna-containing rhodopsin pumps in aquatic environments Reviewed International coauthorship

A. Chazan, I. Das, T. Fujiwara, S. Murakoshi, A. Rozenberg, A. Molina-Márquez, F. K. Sano, T. Tanaka, P. Gómez-Villegas, S. Larom, A. Pushkarev, P. Malakar, M. Hasegawa, Y. Tsukamoto, T. Ishizuka, M. Konno, T. Nagata, Y. Mizuno, K. Katayama, R, Abe-Yoshizumi, S. Ruhman, K. Inoue, H. Kandori, R. León, W. Shihoya*, S. Yoshizawa*, M. Sheves*, O. Nureki*, O. Béjà*

Nature   2023.03

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DOI： 10.1038/s41586-023-05774-6

Early proton transfer reaction in a primate blue-sensitive visual pigment Reviewed

Yosuke Mizuno, Kota Katayama, Hiroo Imai, Hideki Kandori

Biochemistry   2022.11

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Rhodopsin-bestrophin fusion proteins from unicellular algae form gigantic pentameric ion channels Reviewed International coauthorship

28. Andrey Rozenberg, Igor Kaczmarczyk, Donna Matzov, Johannes Vierock, Takashi Nagata, Masahiro Sugiura, Kota Katayama, Yuma Kawasaki, Masae Konno, Yujiro Nagasaka, Mako Aoyama, Ishita Das, Efrat Pahima, Jonathan Church, Suliman Adam, Veniamin A. Borin, Ariel Chazan, Sandra Augustin, Jonas Wietek, Julien Dine, Yoav Peleg, Akira Kawanabe, Yuichiro Fujiwara, Ofer Yizhar, Mordechai Sheves, Igor Schapiro, Yuji Furutani, Hideki Kandori, Keiichi Inoue, Peter Hegemann, Oded Béjà, Moran Shalev-Benami

Nat. Struct. Mol. Biol.   29   592 - 603   2022.06

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DOI： https://doi.org/10.1038/s41594-022-00783-x

Unique hydrogen-bonding network in a viral channelrhodopsin Reviewed

M. Aoyama, K. Katayama, H. Kandori*

Biochim. Biophys. Acta. Bioenerg.   1865 ( 4 )   149148   2024.11

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DOI： https://doi.org/10.1016/j.bbabio.2024.149148

The high-light-sensitivity mechanism and optogenetic properties of the bacteriorhodopsin-like channelrhodopsin GtCCR4 Reviewed

T. Tanaka, S. Hososhima, Y. Yamashita, T. Sugimoto, T. Nakamura, S. Shigemura, W. Iida, F. K. Sano, K. Oda, T. Uchihashi, K. Katayama, Y. Furutani, S. P. Tsunoda, W. Shihoya, H. Kandori*, O. Nureki*

Mol. Cell   84 ( 18 )   3530 - 3544   2024.09

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DOI： https://doi.org/10.1016/j.molcel.2024.08.016

FTIR study of light-induced proton transfer and Ca2+ binding in T82D mutant of TAT rhodopsin Reviewed

T. Sugimoto, K. Katayama, H. Kandori*

Biophys. J   2024.08

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DOI： https://doi.org/10.1016/j.bpj.2024.08.005

Calcium binding mechanism in TAT rhodopsin Reviewed

T. Sugimoto, K. Miyagawa M. Shoji*, K. Katayama, Y. Shigeta, H. Kandori*

J. Phys. Chem. B.   128 ( 29 )   7102 - 7111   2024.07

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DOI： https://doi.org/10.1021/acs.jpcb.4c02363

Glu1022.53-Mediated Early Conformational Changes in the Process of Light-Induced Green Cone Pigment Activation Invited Reviewed

T. Sasaki, K. Katayama*, H. Imai, H. Kandori*

Biochemistry   63 ( 7 )   843 - 854   2024.03

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DOI： https://doi.org/10.1021/acs.biochem.3c00594

Holistic concepts in GPCR dynamics Reviewed

K. Katayama*, R. Suno*

Biophysics and Physicobiology   21   e210011   2024.02

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DOI： doi.org/10.2142/biophysico.bppb-v21.0011

Internal Proton Transfer in the Activation of Heliorhodopsin Reviewed

M. Singh, M. Hashimoto, K. Katayama, Y. Furutani, H. Kandori*

J. Mol. Biol.   2023.09

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DOI： 10.1016/j.jmb.2023.168273

Difference FTIR Spectroscopy of Jumping Spider Rhodopsin-1 at 77 K Reviewed

S. Hanai, T. Nagata, K. Katayama, S. Inukai, M. Koyanagi, K. Inoue, A. Terakita, H. Kandori*

Biochemistry   62 ( 8 )   1347 - 1359   2023.04

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DOI： 10.1021/acs.biochem.3c00022

Characterization of retinal chromophore and protonated Schiff base in Thermoplasmatales archaeon heliorhodopsin using solid-state NMR spectroscopy Invited

S. Suzuki, S. Kumagai, T. Nagashima, T. Yamazaki, T. Okitsu, A. Wada, A. Naito, K. Katayama, K. Inoue, H. Kandori, I. Kawamura*

Biophys Chem.   296   106991 - 106998   2023.03

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DOI： 10.1016/j.bpc.2023.106991

Solid-state NMR for the characterization of retinal chromophore and Schiff base in TAT rhodopsin embedded in membranes under weakly acidic conditions Reviewed

S. Arikawa, T. Sugimoto, T. Okitsu, A. Wada, K. Katayama, H. Kandori, I. Kawamura*

Biophys. PhysicoBiol.   20   e201017_1 - e201017_8   2023.03

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DOI： 10.2142/biophysico.bppb-v20.s017

Molecular mechanism of spectral tuning by chloride binding in monkey green sensitive visual pigment Reviewed

K. J. Fujimoto*, F. Minowa, M. Nishina, S. Nakamura, S. Ohashi, K. Katayama, H. Kandori*, T. Yanai

J. Phys. Chem. Lett.   14 ( 7 )   1784 - 1793   2023.02

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DOI： 10.1021/acs.jpclett.2c03619

Specific zinc binding to heliorhodopsin Reviewed

M. Hashimoto, K. Miyagawa, M. Singh, K. Katayama, M. Shoji*, Y. Furutani, Y. Shigeta, H. Kandori*

Phys. Chem. Chem. Phys.   25 ( 40 )   3535 - 3543   2023.01

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DOI： 10.1039/d2cp04718g

Unusual photoisomerization pathway in a near-infrared light absorbing enzymerhodopsin Reviewed International coauthorship

Masahiro SugiuraMasahiro Sugiura Department of Life Science and Applied Chemistry, Nagoya Institute of Technology, Showa-ku, Nagoya 466-8555, Japan More by Masahiro Sugiura , Kazuki Ishikawa, Kota Katayama, Yuji Sumii, Rei Abe-Yoshizumi, Satoshi P. Tsunoda, Yuji Furutani, Norio Shibata, Leonid S. Brown, and Hideki Kandori

J. Phys. Chem. Lett.   13 ( 40 )   9539 - 9543   2022.10

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Language：Japanese   Publishing type：Research paper (scientific journal)  

DOI： https://doi.org/10.1021/acs.jpclett.2c02334

Proton-transporting heliorhodopsins from marine giant viruses Reviewed International coauthorship

29. Shoko Hososhima, Ritsu Mizutori, Rei Abe-Yoshizumi, Andrey Rozenberg, Shunta Shigemura, Alina Pushkarev, Masae Konno, Kota Katayama, Keiichi Inoue, Satoshi P. Tsunoda, Oded Béjà, Hideki Kandori

eLife   11   2022.09

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DOI： https://doi.org/10.7554/eLife.78416

Calcium Binding to TAT Rhodopsin Reviewed

Teppei Sugimoto, Kota Katayama, Hideki Kandori

J. Phys. Chem. B.   126   2203 - 2207   2022.03

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DOI： https://doi.org/10.1021/acs.jpcb.2c00233

Role of Thr82 for the unique photochemistry of TAT rhodopsin Reviewed International journal

T. Sugimoto, K. Katayama, H. Kandori*

Biophys. Physicobiol.   2021.04

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Vibrational analysis of acetylcholine binding to the M2 receptor Reviewed International journal

K. Suzuki, K. Katayama, Y. Sumii, T. Nakagita, R. Suno, H. Tsujimoto, S. Iwata, T. Kobayashi, N. Shibata, H. Kandori*

RSC Adv.   2021.04

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Time-resolved serial femtosecond crystallography reveals early structural changes in channelrhodopsin Reviewed International coauthorship International journal

K. Oda, T. Nomura, T. Nakane, K. Yamashita, K. Inoue, S. Ito, J. Vierock, K. Hirata, Andrés D Maturana, K. Katayama, T. Ikuta, I. Ishigami, T. Izume, R. Umeda, R. Eguma, S. Oishi, G. Kasuya, T. Kato, T. Kusakizako, W. Shihoya, H. Shimada, T. Takatsuji, M. Takemoto, R. Taniguchi, A. Tomita, R. Nakamura, M. Fukuda, H. Miyauchi, Y. Lee, E. Nango, R. Tanaka, T. Tanaka, M. Sugahara, T. Kimura, T. Shimamura, T. Fujiwara, Y. Yamanaka, S. Owada, Y. Joti, K. Tono, R. Ishitani, S. Hayashi, H. Kandori, P. Hegemann, S. Iwata, M. Kubo*, T. Nishizawa* , O. Nureki*

Elife   2021.03

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TAT rhodopsin is a UV-dependent environmental pH sensor Reviewed International coauthorship International journal

C. Kataoka, T. Sugimoto, S. Shigemura, K. Katayama, S. P. Tsunoda, K. Inoue, O. Béjà, H. Kandori*

Biochemistry   2021.03

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Light-induced difference FTIR spectroscopy of primate blue-sensitive visual pigment at 163 K Reviewed International journal

S. Hanai, K. Katayama, H. Imai, H. Kandori*

Biophys. Physicobiol.   2021.02

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Vibrational spectroscopy analysis of ligand efficacy in human M2 muscarinic acetylcholine receptor (M2R) Reviewed International journal

K. Katayama*, K. Suzuki, R. Suno, R. Kise, H. Tsujimoto, S. Iwata, A. Inoue, T. Kobayashi, H. Kandori*

Communications Biology   2021

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Structural insights into the mechanism of rhodopsin phosphodiesterase Reviewed

T. Ikuta, W. Shihoya, M. Sugiura, K. Yoshida, M. Watari, T. Tokano, K. Yamashita, K. Katayama, S. P. Tsunoda, T. Uchihashi, *H. Kandori, *O. Nureki.

Nat. Commun.   5605   1 - 12   2020.11

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DOI： doi: 10.1038/s41467-020-19376-7.

Zinc binding to Heliorhodopsin Reviewed

M. Hashimoto, K. Katayama, Y. Furutani, *H. Kandori.

J. Phys. Chem. Lett.   11   8604 - 8609   2020.09

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DOI： 10.1021/acs.jpclett.0c02383

Other Link： https://pubs.acs.org/doi/10.1021/acs.jpclett.0c02383

Disruption of water mediated H-bond network in rhodopsin mutations cause night blindness Reviewed

K. Katayama, Y. Takeyama, A. Enomoto, H. Imai, *H. Kandori.

J. Mol. Biol.   432 ( 19 )   5378 - 5389   2020.09

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DOI： 10.1016/j.jmb.2020.08.006

Other Link： https://www.sciencedirect.com/science/article/abs/pii/S0022283620304903?via%3Dihub

Unique retinal binding pocket of primate blue-sensitive visual pigment Reviewed

Y. Nonaka, S. Hanai, K. Katayama, H. Imai, *H. Kandori.

Biochemistry   59 ( 28 )   2602 - 2607   2020.06

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Language：English   Publishing type：Research paper (scientific journal)  

DOI： 10.1021/acs.biochem.0c00394

Other Link： https://pubs.acs.org/doi/10.1021/acs.biochem.0c00394

Structural insights into the mechanism of rhodopsin phosphodiesterase Reviewed

T. Ikuta, W. Shihoya, M. Sugiura, K. Yoshida, M. Watari, T. Tokano, K. Yamashita, K. Katayama, S. P. Tsunoda, T. Uchihashi, *H. Kandori, *O. Nureki.

Nat. Commun.   2020

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Ligand Binding-Induced Structural Changes in the M2 Muscarinic Acetylcholine Receptor Revealed by Vibrational Spectroscopy Reviewed International coauthorship

K. Katayama, K. Suzuki, R. Suno, H. Tsujimoto, S. Iwata, T. Kobayashi, H. Kandori

J. Phys. Chem. Lett.   10 ( 22 )   7270 - 7276   2019.11

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DOI： 10.1021/acs.jpclett.9b02942

Anion binding to mutants of the Schiff base counterion in heliorhodopsin 48C12 Reviewed International coauthorship

M. Singh, K. Katayama, O. Béjà, H. Kandori*

Phys. Chem. Chem. Phys.   Nov 14;21 ( 42 )   23663 - 23671   2019.10

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DOI： 10.1039/c9cp04102h

Crystal structure of heliorhodopsin Reviewed International coauthorship

W. Shihoya, K. Inoue, M. Singh, M. Konno, S. Hososhima, K. Yamashita, K. Ikeda, A. Higuchi, T. Izume, S. Okazaki, M. Hashimoto, R. Mizutori, S. Tomida, Y. Yamauchi, R. Abe-Yoshizumi, K. Katayama, S. P. Tsunoda, M. Shibata, Y. Furutani, A. Pushkarev, O. Béjà, T. Uchihashi, H. Kandori*, O. Nureki*

Nature   574   132 - 136   2019.09

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DOI： 10.1038/s41586-019-1604-6

Unique photochemistry observed in a new microbial rhodopsin Reviewed International coauthorship

C. Kataoka, K. Inoue, K. Katayama, O. Béjà, H. Kandori*

J. Phys. Chem. Lett.   10   5117 - 5121   2019.08

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DOI： 10.1021/acs.jpclett.9b01957

FTIR study of S180A mutant of primate red-sensitive pigment Reviewed

K. Katayama, H. Imai, H. Kandori*

Chem. Lett.   48   1142 - 1144   2019.07

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DOI： 10.1246/cl.190458

Role of Gln114 in spectral tuning of a long-wavelength sensitive visual pigment Reviewed

K. Katayama, S. Nakamura, T. Sasaki, H. Imai, H. Kandori*

Biochemistry   58   2944 - 2952   2019.06

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DOI： 10.1021/acs.biochem.9b00340.

Specificity of the chromophore-binding site in human cone opsins Reviewed International coauthorship

Katayama, K., Gulati, S., Ortega, J. T., Alexander, N. S., Sun, W., Shenouda, M. M., Palczewski, K., Jastrzebska, B.

Journal of Biological Chemistry   2019.02

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Ligand Binding-Induced Structural Changes in the M2 Muscarinic Acetylcholine Receptor by Vibrational Spetroscopy Reviewed

K. Katayama, K. Suzuki, R. Suno, H. Tsujimoto, S. Iwata, T. Kobayashi, H. Kandori*

J. Phys. Chem. Lett.   10   7270 - 7276   2019

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DOI： 10. 1021/acs.jpclett. 9b02942

"In situ" observation of the role of chloride ion binding to monkey green sensitive visual pigment by ATR-FTIR spectroscopy. Reviewed

Katayama K, Furutani Y, Iwaki M, Fukuda T, Imai H, Kandori H.

Phys Chem Chem Phys.   20 ( 5 )   3381 - 3387   2018

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DOI： 10.1039/c7cp07277e.

Photocyclic behavior of rhodopsin induced by an atypical isomerization mechanism Reviewed

S. Gulati, B. Jastrzebska, S. Banerjee, Á. L. Placeres, P. Miszta, S. Gao, K. Gunderson, G. P. Tochtrop, S. Filipek, K. Katayama*, P. D. Kiser, M. Mogi, P. L. Stewart, K. Palczewski*

Proceedings of the National Academy of Sciences   114   E2608 - E2615   2017

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Complex binding pathways determine the regeneration of mammalian green cone opsin with a locked retinal analogue Reviewed

N. S. Alexander, K. Katayama, W. Sun, D. Salom, S. Gulati, J. Zhang, M. Mogi, K. Palczewski*, B. Jastrzebska*

The Journal of Biological Chemistry   292   10983 - 10997   2017

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Spectral tuning mechanism of primate blue-sensitive visual pigment elucidated by FTIR spectroscopy Reviewed

K. Katayama, Y. Nonaka, K. Tsutsui, H. Imai, H. Kandori*

Scientific Reports   7   4904 - 4914   2017

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Identical Hydrogen-Bonding Strength of the Retinal Schiff Base between Primate Green- and Red-Sensitive Pigments: New Insight into Color Tuning Mechanism Reviewed

K. Katayama, T. Okitsu, H. Imai, A. Wada, H. Kandori*

The Journal of Physical Chemistry Letters   6   1130 - 1133   2015

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FTIR study of color and twilight visual pigments

Kota Katayama

2013.09

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Language：English   Publishing type：Doctoral thesis  

Color vision: "OH-site" rule for seeing red and green Reviewed International coauthorship

S. Sekharan, K. Katayama, H. Kandori, K. Morokuma*

Journal of the American Chemical Society   134   10706 - 10712   2012

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Protein-bound water molecules in primate red- and green-sensitive visual pigments Reviewed

K. Katayama, Y. Furutani, H. Imai, H. Kandori*

Biochemistry   51   1126 - 1133   2012

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FTIR study of the photoreaction of bovine rhodopsin in the presence of hydroxylamine Reviewed

K. Katayama, Y. Furutani, H. Kandori*

The Journal of Physical Chemistry B   114   9039 - 9046   2010

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An FTIR study of monkey green- and red-sensitive visual pigments Reviewed

K. Katayama, Y. Furutani, H. Imai, *H. Kandori

Angewandte Chemie International Edition   49   891 - 894   2010

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