Papers - KATAYAMA Kota

Structural basis for the allosteric modulation of rhodopsin by nanobody binding to its extracellular domain Reviewed International coauthorship

A. Wu, D. Salom, J. D. Hong, A. Tworak, K. Watanabe, E. Pardon, J. Steyaert, H. Kandori, K. Katayama*, P. D. Kiser*, K. Palczewski*

Nat. Commun   14 ( 1 )   5209   2023.09

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Authorship：Corresponding author   Language：English   Publishing type：Research paper (scientific journal)  

DOI： 10.1038/s41467-023-40911-9

Structural basis for ion selectivity in potassium-selective channelrhodopsins Reviewed International coauthorship

S. Tajima, Y. S. Kim, M. Fukuda, Y. Jo, P. Y. Wang, J. M. Paggi, M. Inoue, E. F. X. Byrne, K. E. Kishi, S. Nakamura, C. Ramakrishnan, S. Takaramoto, T. Nagata, M. Konno, M. Sugiura, K. Katayama, T. E. Matsui, K. Yamashita, S. Kim, H. Ikeda, J. Kim, H. Kandori, R. O. Dror, K. Inoue, K. Deisseroth*, H. E. Kato*

Cell   186 ( 20 )   4325 - 4344   2023.09

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Language：English   Publishing type：Research paper (scientific journal)  

DOI： 10.1016/j.cell.2023.08.009

Investigating the Mechanism of Photoisomerization in Jellyfish Rhodopsin with the Counterion at an Atypical Position Reviewed

S. Inukai, K. Katayama*, M Koyanagi, A. Terakita, H. Kandori*

Journal of Biological Chemistry   299 ( 6 )   104726   2023.05

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DOI： 10.1016/j.jbc.2023.104726

Phototrophy by antenna-containing rhodopsin pumps in aquatic environments Reviewed International coauthorship

A. Chazan, I. Das, T. Fujiwara, S. Murakoshi, A. Rozenberg, A. Molina-Márquez, F. K. Sano, T. Tanaka, P. Gómez-Villegas, S. Larom, A. Pushkarev, P. Malakar, M. Hasegawa, Y. Tsukamoto, T. Ishizuka, M. Konno, T. Nagata, Y. Mizuno, K. Katayama, R, Abe-Yoshizumi, S. Ruhman, K. Inoue, H. Kandori, R. León, W. Shihoya*, S. Yoshizawa*, M. Sheves*, O. Nureki*, O. Béjà*

Nature   2023.03

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Language：English  

DOI： 10.1038/s41586-023-05774-6

Early proton transfer reaction in a primate blue-sensitive visual pigment Reviewed

Yosuke Mizuno, Kota Katayama, Hiroo Imai, Hideki Kandori

Biochemistry   2022.11

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Rhodopsin-bestrophin fusion proteins from unicellular algae form gigantic pentameric ion channels Reviewed International coauthorship

28. Andrey Rozenberg, Igor Kaczmarczyk, Donna Matzov, Johannes Vierock, Takashi Nagata, Masahiro Sugiura, Kota Katayama, Yuma Kawasaki, Masae Konno, Yujiro Nagasaka, Mako Aoyama, Ishita Das, Efrat Pahima, Jonathan Church, Suliman Adam, Veniamin A. Borin, Ariel Chazan, Sandra Augustin, Jonas Wietek, Julien Dine, Yoav Peleg, Akira Kawanabe, Yuichiro Fujiwara, Ofer Yizhar, Mordechai Sheves, Igor Schapiro, Yuji Furutani, Hideki Kandori, Keiichi Inoue, Peter Hegemann, Oded Béjà, Moran Shalev-Benami

Nat. Struct. Mol. Biol.   29   592 - 603   2022.06

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Language：English   Publishing type：Research paper (scientific journal)  

DOI： https://doi.org/10.1038/s41594-022-00783-x

Unique hydrogen-bonding network in a viral channelrhodopsin Reviewed

M. Aoyama, K. Katayama, H. Kandori*

Biochim. Biophys. Acta. Bioenerg.   1865 ( 4 )   149148   2024.11

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DOI： https://doi.org/10.1016/j.bbabio.2024.149148

The high-light-sensitivity mechanism and optogenetic properties of the bacteriorhodopsin-like channelrhodopsin GtCCR4 Reviewed

T. Tanaka, S. Hososhima, Y. Yamashita, T. Sugimoto, T. Nakamura, S. Shigemura, W. Iida, F. K. Sano, K. Oda, T. Uchihashi, K. Katayama, Y. Furutani, S. P. Tsunoda, W. Shihoya, H. Kandori*, O. Nureki*

Mol. Cell   84 ( 18 )   3530 - 3544   2024.09

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DOI： https://doi.org/10.1016/j.molcel.2024.08.016

FTIR study of light-induced proton transfer and Ca2+ binding in T82D mutant of TAT rhodopsin Reviewed

T. Sugimoto, K. Katayama, H. Kandori*

Biophys. J   2024.08

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DOI： https://doi.org/10.1016/j.bpj.2024.08.005

Calcium binding mechanism in TAT rhodopsin Reviewed

T. Sugimoto, K. Miyagawa M. Shoji*, K. Katayama, Y. Shigeta, H. Kandori*

J. Phys. Chem. B.   128 ( 29 )   7102 - 7111   2024.07

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DOI： https://doi.org/10.1021/acs.jpcb.4c02363

Glu1022.53-Mediated Early Conformational Changes in the Process of Light-Induced Green Cone Pigment Activation Invited Reviewed

T. Sasaki, K. Katayama*, H. Imai, H. Kandori*

Biochemistry   63 ( 7 )   843 - 854   2024.03

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DOI： https://doi.org/10.1021/acs.biochem.3c00594

Holistic concepts in GPCR dynamics Reviewed

K. Katayama*, R. Suno*

Biophysics and Physicobiology   21   e210011   2024.02

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Authorship：Lead author,　Corresponding author   Language：English   Publishing type：Research paper (scientific journal)  

DOI： doi.org/10.2142/biophysico.bppb-v21.0011

Internal Proton Transfer in the Activation of Heliorhodopsin Reviewed

M. Singh, M. Hashimoto, K. Katayama, Y. Furutani, H. Kandori*

J. Mol. Biol.   2023.09

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Language：English   Publishing type：Research paper (scientific journal)  

DOI： 10.1016/j.jmb.2023.168273

Difference FTIR Spectroscopy of Jumping Spider Rhodopsin-1 at 77 K Reviewed

S. Hanai, T. Nagata, K. Katayama, S. Inukai, M. Koyanagi, K. Inoue, A. Terakita, H. Kandori*

Biochemistry   62 ( 8 )   1347 - 1359   2023.04

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Language：English   Publishing type：Research paper (scientific journal)  

DOI： 10.1021/acs.biochem.3c00022

Characterization of retinal chromophore and protonated Schiff base in Thermoplasmatales archaeon heliorhodopsin using solid-state NMR spectroscopy Invited

S. Suzuki, S. Kumagai, T. Nagashima, T. Yamazaki, T. Okitsu, A. Wada, A. Naito, K. Katayama, K. Inoue, H. Kandori, I. Kawamura*

Biophys Chem.   296   106991 - 106998   2023.03

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Language：English   Publishing type：Research paper (scientific journal)  

DOI： 10.1016/j.bpc.2023.106991

Solid-state NMR for the characterization of retinal chromophore and Schiff base in TAT rhodopsin embedded in membranes under weakly acidic conditions Reviewed

S. Arikawa, T. Sugimoto, T. Okitsu, A. Wada, K. Katayama, H. Kandori, I. Kawamura*

Biophys. PhysicoBiol.   20   e201017_1 - e201017_8   2023.03

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Language：English   Publishing type：Research paper (scientific journal)  

DOI： 10.2142/biophysico.bppb-v20.s017

Molecular mechanism of spectral tuning by chloride binding in monkey green sensitive visual pigment Reviewed

K. J. Fujimoto*, F. Minowa, M. Nishina, S. Nakamura, S. Ohashi, K. Katayama, H. Kandori*, T. Yanai

J. Phys. Chem. Lett.   14 ( 7 )   1784 - 1793   2023.02

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Language：English   Publishing type：Research paper (scientific journal)  

DOI： 10.1021/acs.jpclett.2c03619

Specific zinc binding to heliorhodopsin Reviewed

M. Hashimoto, K. Miyagawa, M. Singh, K. Katayama, M. Shoji*, Y. Furutani, Y. Shigeta, H. Kandori*

Phys. Chem. Chem. Phys.   25 ( 40 )   3535 - 3543   2023.01

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Language：English   Publishing type：Research paper (scientific journal)  

DOI： 10.1039/d2cp04718g

Unusual photoisomerization pathway in a near-infrared light absorbing enzymerhodopsin Reviewed International coauthorship

Masahiro SugiuraMasahiro Sugiura Department of Life Science and Applied Chemistry, Nagoya Institute of Technology, Showa-ku, Nagoya 466-8555, Japan More by Masahiro Sugiura , Kazuki Ishikawa, Kota Katayama, Yuji Sumii, Rei Abe-Yoshizumi, Satoshi P. Tsunoda, Yuji Furutani, Norio Shibata, Leonid S. Brown, and Hideki Kandori

J. Phys. Chem. Lett.   13 ( 40 )   9539 - 9543   2022.10

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Language：Japanese   Publishing type：Research paper (scientific journal)  

DOI： https://doi.org/10.1021/acs.jpclett.2c02334

Proton-transporting heliorhodopsins from marine giant viruses Reviewed International coauthorship

29. Shoko Hososhima, Ritsu Mizutori, Rei Abe-Yoshizumi, Andrey Rozenberg, Shunta Shigemura, Alina Pushkarev, Masae Konno, Kota Katayama, Keiichi Inoue, Satoshi P. Tsunoda, Oded Béjà, Hideki Kandori

eLife   11   2022.09

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DOI： https://doi.org/10.7554/eLife.78416