KANDORI Hideki

写真a

Affiliation Department etc.

Department of Life Science and Applied Chemistry
Department of Life Science and Applied Chemistry

Title

Professor

Graduating School

  •  
    -
    1984.03

    Kyoto University   Faculty of Science   Graduated

Graduate School

  •  
    -
    1989.03

    Kyoto University  Graduate School, Division of Natural Science  Doctor's Course  Completed

Degree

  • Kyoto University -  Master of Science

  • Kyoto University -  Doctor of Science

External Career

  • 1999.04
    -
    2001.03

    Graduate School of Science, Kyoto University   Lecturer  

  • 1993.04
    -
    1998.03

    Graduate School of Science, Kyoto University   Research Assistant  

  • 1992.04
    -
    1993.03

      Researcher  

  • 1990.04
    -
    1991.03

      Researcher  

  • 1988.04
    -
    1990.03

    Research Fellow of the Japan Society for the Promotion of Science   Special researcher of the Japan Society for the Promotion of Science  

Field of expertise (Grants-in-aid for Scientific Research classification)

  • Biophysics

  • Structural biochemistry

  • Functional biochemistry

  • Bio-related chemistry

  • Biological physics/Chemical physics/Soft matter physics

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Research Career

  • Mechanism of Light-Signal Conversion in Photoreceptive Proteins

    Individual   (not selected)  

    Project Year:   - 

  • Development in Infrared Spectroscopy through the Rhodopsin Study

    Individual   (not selected)  

    Project Year:   - 

  • Mechanism of Light-Energy Conversion in Photoreceptive Proteins

    Individual   (not selected)  

    Project Year:   - 

Papers

  • Resonance Raman Investigation of the Chromophore Structure of Heliorhodopsins

    A. Otomo, M. Mizuno, M. Singh, W. Shihoya, K. Inoue, O. Nureki, O. Béjà, H. Kandori, Y. Mizutani*

    J Phys Chem Lett.   9 ( xxx ) 6431 - 6436   2018.10  [Refereed]

    Research paper (scientific journal)   Multiple Authorship

  • Understanding Colour Tuning Rules and Predicting Absorption Wavelengths of Microbial Rhodopsins by Data-Driven Machine-Learning Approach

    M. Karasuyama, K. Inoue, R. Nakamura, H. Kandori*, I. Takeuchi*

    Sci Rep.   8 ( 1 ) 15580 - 15580   2018.10  [Refereed]

    Research paper (scientific journal)   Multiple Authorship

  • Zn2+-Binding to the Voltage-Gated Proton Channel Hv1/VSOP

    M. Iwaki, K. Takeshita, H. X. Kondo, K. Kinoshita, Y. Okamura, Y. Takano, A. Nakagawa, H. Kandori*

    J Phys Chem B.   122 ( 39 ) 9076 - 9080   2018.09  [Refereed]

    Research paper (scientific journal)   Multiple Authorship

  • Hydrogen Bonding Environments in the Photocycle Process around the Flavin Chromophore of the AppA-BLUF domain

    T. Iwata*, T. Nagai, S. Ito, S.Osoegawa, M. Iseki, M. Watanabe, M. Unno, S. Kitagawa, H. Kandori

    J Am Chem Soc.   140 ( 38 ) 11982 - 11991   2018.08  [Refereed]

    Research paper (scientific journal)   Multiple Authorship

  • Structural mechanisms of selectivity and gating in anion channelrhodopsins

    H. E. Kato*, Y. S. Kim, J. M. Paggi, K. E. Evans, W. E. Allen, C. Richardson, K. Inoue, S. Ito, C. Ramakrishnan, L. E. Fenno, K. Yamashita, D. Hilger, S. Y. Lee, A. Berndt, K. Shen, H. Kandori, R. O. Dror, B. K. Kobilka, K. Deisseroth*

    Nature   561 ( 7723 ) 349 - 354   2018.08  [Refereed]

    Research paper (scientific journal)   Multiple Authorship

  • Crystal structure of the natural anion-conducting channelrhodopsin GtACR1

    Y. S. Kim, H. E. Kato*, K. Yamashita, S. Ito, K. Inoue, C. Ramakrishnan, L. E. Fenno, K. E. Evans, J. M. Paggi, R. O. Dror, H. Kandori, B. K. Kobilka, K. Deisseroth*

    Nature   561 ( 7723 ) 343 - 348   2018.08  [Refereed]

    Research paper (scientific journal)   Multiple Authorship

  • Mutation Study of Heliorhodopsin 48C12

    M. Singh, K. Inoue, A.Pushkarev, O.Béjà, H. Kandori*

    Biochemistry   57 ( 33 ) 5041 - 5049   2018.07  [Refereed]

    Research paper (scientific journal)   Multiple Authorship

  • A distinct abundant group of microbial rhodopsins discovered using functional metagenomics

    A. Pushkarev, K. Inoue, S. Larom, J. Flores-Uribe, M. Singh, M. Konno, S. Tomida, S. Ito, R. Nakamura, S. P. Tsunoda, A. Philosof, I. Sharon, N. Yutin, E. V. Koonin, H. Kandori*, O. Béjà*

    Nature   558 ( 7711 ) 595 - 599   2018.06  [Refereed]

    Research paper (scientific journal)   Multiple Authorship

  • Time-resolved FTIR study of light-driven sodium pump rhodopsins

    H. F. Chen, K. Inoue, H. Ono, R. Abe-Yoshizumi, A. Wada, H. Kandori*

    Phys Chem Chem Phys.   20 ( 26 ) 17694 - 17704   2018.06  [Refereed]

    Research paper (scientific journal)   Multiple Authorship

  • Oligomeric states of microbial rhodopsins determined by high-speed atomic force microscopy and circular dichroic spectroscopy

    M. Shibata, K. Inoue, K. Ikeda, M. Konno, M. Singh, C. Kataoka, R. Abe-Yoshizumi, H. Kandori*, T. Uchihashi*

    Sci Rep.   8 ( 1 ) 8262 - 8262   2018.05  [Refereed]

    Research paper (scientific journal)   Multiple Authorship

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Books

  • History and perspectives of light-sensing proteins

    H. Kandori (Part: Single Author )

    Elsevier  2015.04

  • Protein-controlled isomerization in rhodopsins

    H. Kandori (Part: Single Author )

    Elsevier  2015.04

  • “Protein-Controlled Ultrafast Photoisomerization in Rhodopsin and Bacteriorhodopsin” in "Supramolecular Effects on Photochemical and Photophysical Processes"

    H. Kandori (Part: Single Author )

    John Wiley & Sons, Inc.   2011.06

  • “Supramolecular Effects on Mechanisms of Photoisomerization: Hula-Twist, Bicycle-Pedal and One-Bond-Flip” in "Supramolecular Effects on Photochemical and Photophysical Processes"

    R. S. H. Liu, L.-Y. Yang, Y.-P. Zhao, A. Kawanabe and H. Kandori (Part: Multiple Authorship )

    John Wiley & Sons, Inc.   2011.06

  • "Hydrogen Bonds of Protein-Bound Water Molecules in Rhodopsins" in "Hydrogen Bonding and Transfer in the Excited State"

    H. Kandori (Part: Multiple Authorship )

    John Wiley & Sons Ltd  2010.10

  • Progress in Retinal Research

    (Part: Single Author )

    1992.04

Review Papers

  • Light-driven sodium-pumping rhodopsin: a new concept of active transport

    H. Kandori*, K. Inoue, S. P. Tsunoda

    Chem. Rev.   118 ( 21 ) 10646 - 10658   2018.11

    Introduction and explanation (scientific journal)   Multiple Authorship

  • Complex molecular systems: a frontier of molecular science

    T. Tahara, A. Kitao, Y. Mizutani, H. Kandori, M. Fujii

    Phys Chem Chem Phys.   20 ( 5 ) 2945 - 2946   2018.01

    Introduction and explanation (scientific journal)   Multiple Authorship

  • Conversion of microbial rhodopsins: insights into functionally essential elements and rational protein engineering

    A. Kaneko, K. Inoue, K. Kojima, H. Kandori, Y. Sudo*

    Biophys. Rev.     2017

    Introduction and explanation (scientific journal)   Multiple Authorship

  • The light-driven sodium ion pump: A new player in rhodopsin research.

    Kato HE, Inoue K, Kandori H, Nureki O.

    Bioessay     2016.06

    Introduction and explanation (scientific journal)   Multiple Authorship

  • Light-driven ion-translocating rhodopsins in marine bacteria

    K. Inoue , Y. Kato, H. Kandori*

    Trends Microbiol.     2015.04

    Introduction and explanation (scientific journal)   Multiple Authorship

  • Ion-pumping microbial rhodopsins

    H. Kandori

    Front. Mol. Biosci.     2015.04

    Introduction and explanation (scientific journal)   Single Author

  • FTIR study of primate color visual pigments

    K. Katayama , H. Kandori*

    BIOPHYSICS     2015.04

    Introduction and explanation (scientific journal)   Multiple Authorship

  • Microbial and animal rhodopsins: Structuress, functions, and molecular mechansims

    O. P. Ernst, D. T. Lodowski, M. Elstner, P. Hegemann, L. S. Brown, H. Kandori

    Chem. Rev. ( Americal Chemical Society )    2014.01

    Introduction and explanation (international conference proceedings)   Multiple Authorship

  • Hydrogen-bonding changes of internal water molecules upon the actions of microbial rhodopsins studied by FTIR spectroscopy

    Y. Furutani, H. Kandori

    Biochim. Biophys. Acta ( Elsevier )    2013.09

    Introduction and explanation (scientific journal)   Multiple Authorship

  • FTIR spectroscopy of flavin-binding photoreceptors

    D. Yamada and H. Kandori

    Methods in Molecular Biology ( Springer )    2013.04

    Introduction and explanation (commerce magazine)   Multiple Authorship

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Presentations

  • Metal binding to the voltage-gated proton channel Hv1/VSOP

    M. Iwaki, K. Takeshita, H. X. Kondo, K. Kinoshita, Y. Okamura, Y. Takano, A. Nakagawa, H. Kandori

    The 49th Natl Inst Physiol Sci (NIPS) International Symposium "Ion channels: looking back, seeing ahead"  2018.12  -  2018.12 

  • Electrophysiological analysis of anion channelrhodopsin GtACR1

    R. Tashiro, S. Hososhima, S. Shigemura, H. Kandori, S. Tsunoda

    The 49th Natl Inst Physiol Sci (NIPS) International Symposium "Ion channels: looking back, seeing ahead"  2018.12  -  2018.12 

  • Electrophysiological characterization of powerful cation channelrhodopsin Gt_CCR4

    S. Shigemura, S. Hososhima, H. Kandori, S. Tsunoda

    The 49th Natl Inst Physiol Sci (NIPS) International Symposium "Ion channels: looking back, seeing ahead"  2018.12  -  2018.12 

  • Kinetic evaluation and engineering light-gated cation channels from Guillardia theta for optogenetics

    S. Hososhima, S. Tsunoda, H. Kandori

    The 49th Natl Inst Physiol Sci (NIPS) International Symposium "Ion channels: looking back, seeing ahead"  2018.12  -  2018.12 

  • The (6-4) Photolyase Reaction~Role of the Important Residues in Active Center~

    D. Yamada, H. M. Dokainish, J. Yamamoto, T. Iwata, E. D. Getzoff, A. Kitao, H. Kandori

    Asian Biophysics Association Symposium and Annual Meeting of the Australian Society for Biophysics  2018.12  -  2018.12 

  • FTIR study of hydrogen bonding environment in each FAD redox in photolyase/cryptochrome family

    Y. Sakai, D. Yamada, T. Iwata, H. Kandori

    Asian Biophysics Association Symposium and Annual Meeting of the Australian Society for Biophysics  2018.12  -  2018.12 

  • Spectroscopic study of UV-absorbing microbial rhodopsin

    C. Kataoka, K. Inoue, K. Katayama, Oded Béjà, H. Kandori

    Asian Biophysics Association Symposium and Annual Meeting of the Australian Society for Biophysics  2018.12  -  2018.12 

  • Biophysics of rhodopsins

    H. Kandori  [Invited]

    The 2018 Kyoto Prize Workshop: Advanced Technology  2018.11  -  2018.11 

  • Light-driven sodium-pumping rhodopsin: A new concept of active transport

    H. Kandori  [Invited]

    18th International Conference on Retinal Proteins  2018.09  -  2018.09 

  • The unique hydrogen bonding network of sodium pump rhodopsin, KR2, with protein bound water on the extracellular side

    S. Tomida, S. Ito, K. Inoue, H. Kandori

    18th International Conference on Retinal Proteins  2018.09  -  2018.09 

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Industrial Property

  • Proton pump and its applications

    特願 特願2016-173556 

    Proton pump and its applications