KANDORI Hideki

写真a

Affiliation Department etc.

Department of Life Science and Applied Chemistry
Department of Life Science and Applied Chemistry
Opto-Biotechnology Research Center

Title

Professor

Graduating School

  •  
    -
    1984.03

    Kyoto University   Faculty of Science   Graduated

Graduate School

  •  
    -
    1989.03

    Kyoto University  Graduate School, Division of Natural Science  Doctor's Course  Completed

Degree

  • Kyoto University -  Master of Science

  • Kyoto University -  Doctor of Science

External Career

  • 1999.04
    -
    2001.03

    Graduate School of Science, Kyoto University   Lecturer  

  • 1993.04
    -
    1998.03

    Graduate School of Science, Kyoto University   Research Assistant  

  • 1992.04
    -
    1993.03

      Researcher  

  • 1990.04
    -
    1991.03

      Researcher  

  • 1988.04
    -
    1990.03

    Research Fellow of the Japan Society for the Promotion of Science   Special researcher of the Japan Society for the Promotion of Science  

Field of expertise (Grants-in-aid for Scientific Research classification)

  • Biophysics

  • Biological physics/Chemical physics/Soft matter physics

  • Basic chemistry

  • Bio-related chemistry

  • Structural biochemistry

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Research Career

  • Mechanism of Light-Signal Conversion in Photoreceptive Proteins

    Individual   (not selected)  

    Project Year:   - 

  • Development in Infrared Spectroscopy through the Rhodopsin Study

    Individual   (not selected)  

    Project Year:   - 

  • Mechanism of Light-Energy Conversion in Photoreceptive Proteins

    Individual   (not selected)  

    Project Year:   - 

Papers

  • Structural insights into the mechanism of rhodopsin phosphodiesterase

    T. Ikuta, W. Shihoya, M. Sugiura, K. Yoshida, M. Watari, T. Tokano, K. Yamashita, K. Katayama, S. P. Tsunoda, T Uchihashi, H. Kandori and O. Nureki

    Nat. Commun.   5605   2020.11  [Refereed]

    Research paper (scientific journal)   Multiple Authorship

  • Zinc Binding to Heliorhodopsin

    M. Hashimoto, K. Katayama, Y. Furutani and H. Kandori

    J. Phys. Chem. Lett.   11 ( 20 ) 8604 - 8609   2020.10  [Refereed]

    Research paper (scientific journal)   Multiple Authorship

  • ATP binding promotes light-induced structural changes to the protein moiety of Arabidopsis cryptochrome 1

    T. Iwata, D. Yamada, K. Mikuni, K. Agata, K. Hitomi, E. D. Getzoff and H. Kandori

    Photochem. Photobiol. Sci.   19 ( 10 ) 1326 - 1331   2020.10  [Refereed]

    Research paper (scientific journal)   Multiple Authorship

  • Structural basis for unique color tuning mechanism in heliorhodopsin

    T. Tanaka, M. Singh, W. Shihoya, K. Yamashita, H. Kandori and O. Nureki

    Biochem. Biophys. Res. Commun. S0006-291X,     31342 - 31345   2020.09  [Refereed]

    Research paper (scientific journal)   Multiple Authorship

  • Disruption of Hydrogen-Bond Network in Rhodopsin Mutations Cause Night Blindness

    K. Katayama, Y. Takeyama, A. Enomoto, H. Imai and H. Kandori

    J. Mol. Biol.   432   5378 - 5389   2020.09  [Refereed]

    Research paper (scientific journal)   Multiple Authorship

  • Active Learning of Bayesian Linear Models with High-Dimensional Binary Features by Parameter Confidence-Region Estimation

    Y. Inatsu, M. Karasuyama, K. Inoue, H. Kandori and I. Takeuchi

    Neural Comput.   32   1998 - 2031   2020.09  [Refereed]

    Research paper (scientific journal)   Multiple Authorship

  • Infrared spectroscopic analysis on structural changes around the protonated Schiff base upon retinal isomerization in light-driven sodium pump KR2

    S. Tomida, S. Ito, T. Mato, Y. Furutani, K. Inoue and H. Kandori

    Biochim. Biophys. Acta   1861 ( 148190 )   2020.07  [Refereed]

    Research paper (scientific journal)   Multiple Authorship

  • Unique Retinal Binding Pocket of Primate Blue-Sensitive Visual Pigment

    Y. Nonaka, S. Hanai, K. Katayama, H. Imai and H. Kandori

    Biochemistry   59 ( 28 ) 2602 - 2607   2020.07  [Refereed]

    Research paper (scientific journal)   Multiple Authorship

  • Mechanism of Inward Proton Transport in an Antarctic Microbial Rhodopsin

    A. Harris, M. Lazaratos, M. Siemers, E. Watt, A. Hoang, S. Tomida, L. Schubert, M. Saita, J. Heberle, Y. Furutani, H. Kandori, A. N. Bondar and L. S. Brown

    J. Phys. Chem. B   124   4851 - 4872   2020.06  [Refereed]

    Research paper (scientific journal)   Multiple Authorship

  • Gate-keeper of ion transport—a highly conserved helix-3 tryptophan in a channelrhodopsin chimera, C1C2/ChRWR

    Y. Nagasaka, S. Hososhima, N. Kubo, T. Nagata, H. Kandori, K. Inoue and H. Yawo

    Biophys. Physicobiol.   17   59 - 70   2020.06  [Refereed]

    Research paper (scientific journal)   Multiple Authorship

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Books

  • History and perspectives of light-sensing proteins

    H. Kandori (Part: Single Author )

    Elsevier  2015.04

  • Protein-controlled isomerization in rhodopsins

    H. Kandori (Part: Single Author )

    Elsevier  2015.04

  • “Protein-Controlled Ultrafast Photoisomerization in Rhodopsin and Bacteriorhodopsin” in "Supramolecular Effects on Photochemical and Photophysical Processes"

    H. Kandori (Part: Single Author )

    John Wiley & Sons, Inc.   2011.06

  • “Supramolecular Effects on Mechanisms of Photoisomerization: Hula-Twist, Bicycle-Pedal and One-Bond-Flip” in "Supramolecular Effects on Photochemical and Photophysical Processes"

    R. S. H. Liu, L.-Y. Yang, Y.-P. Zhao, A. Kawanabe and H. Kandori (Part: Multiple Authorship )

    John Wiley & Sons, Inc.   2011.06

  • "Hydrogen Bonds of Protein-Bound Water Molecules in Rhodopsins" in "Hydrogen Bonding and Transfer in the Excited State"

    H. Kandori (Part: Multiple Authorship )

    John Wiley & Sons Ltd  2010.10

  • Progress in Retinal Research

    (Part: Single Author )

    1992.04

Review Papers

  • Structure/Function Study of Photoreceptive Proteins by FTIR Spectroscopy

    H. Kandori

    Bull. Chem. Soc. Jpn .   93   904 - 926   2020.07

    Introduction and explanation (scientific journal)   Single Author

  • Biophysics of rhodopsins and optogenetics

    H. Kandori

    Biophys. Rev.   12   355 - 361   2020.04

    Introduction and explanation (scientific journal)   Single Author

  • Novel optogenetics tool: Gt_CCR4 A light-gated cation channel with high-reactivity to weak light

    S. Hososhima, S. Shigemura, H. Kandori, S. P. Tsunoda

    Biophys. Rev.   12   453 - 459   2020.03

    Introduction and explanation (scientific journal)   Multiple Authorship

  • Retinal Proteins: Photochemistry and Optogenetics

    H. Kandori

    Bulletin of the Chemical Society of Japan   93   76 - 85   2020.01

    Introduction and explanation (bulletin of university, research institution)   Single Author

  • History and perspectives of light-sensing proteins

    H. Kandori

    Optogenetics, Adv Exp Med Biol ( Springer Nature )  1293   2020

    Introduction and explanation (scientific journal)   Single Author

  • Molecular properties and optogenetic applications of enzymerhodopsins

    S. P. Tsunoda, M. Sugiura and H. Kandori

    Optogenetics, Adv Exp Med Biol ( Springer Nature )  1293   2020

    Introduction and explanation (scientific journal)   Multiple Authorship

  • Light-induced difference FTIR spectroscopy of photoreceptive proteins

    H. Kandori, K. Katayama

    Vibrational Spectroscopy in Protein Research: From Purified Proteins to Aggregates and Assemblies (Y. Ozaki, M. Baranska, I. Lednev, B. R. Wood, eds) ( Elsevier )    2019

    Introduction and explanation (scientific journal)   Multiple Authorship

  • Light-driven sodium-pumping rhodopsin: a new concept of active transport

    H. Kandori*, K. Inoue, S. P. Tsunoda

    Chem. Rev.   118 ( 21 ) 10646 - 10658   2018.11

    Introduction and explanation (scientific journal)   Multiple Authorship

  • Complex molecular systems: a frontier of molecular science

    T. Tahara, A. Kitao, Y. Mizutani, H. Kandori, M. Fujii

    Phys Chem Chem Phys.   20 ( 5 ) 2945 - 2946   2018.01

    Introduction and explanation (scientific journal)   Multiple Authorship

  • Conversion of microbial rhodopsins: insights into functionally essential elements and rational protein engineering

    A. Kaneko, K. Inoue, K. Kojima, H. Kandori, Y. Sudo*

    Biophys. Rev.     2017

    Introduction and explanation (scientific journal)   Multiple Authorship

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Presentations

  • Disruption of hydrogen-bond network in rhodopsin mutations cause night blindness

    K.Katayama, Y. Takeyama, A. Enomoto, H. Imai andH. Kandori

    The 58th Annual Meeting of the Biophysical Society of Japan  2020.09  -  2020.09 

  • Expression of Heliorhodopsin in Actinotalea fermentans

    R. Abe-Yoshizumi, A. Muto and H. Kandori

    The 58th Annual Meeting of the Biophysical Society of Japan  2020.09  -  2020.09 

  • Anion binding to mutants of the Schiff base counterion in heliorhodopsin

    M. Singh, K. Katayama, O. Béjà and H. Kandori

    The 58th Annual Meeting of the Biophysical Society of Japan  2020.09  -  2020.09 

  • Gene expression analysis of microbial rhodopsins from marine algae Guillardia theta

    Y. Yamauchi, M. Konno, K. Inoue and H. Kandori

    The 58th Annual Meeting of the Biophysical Society of Japan  2020.09  -  2020.09 

  • Molecular properties of eight novel rhodopsin phosphodiesterases (Rh-PDEs)

    M. Sugiura, S. Tsunoda, M. Hibi and H. Kandori

    The 58th Annual Meeting of the Biophysical Society of Japan  2020.09  -  2020.09 

  • Infrared spectroscopic study for elucidating ligand recognition mechanism of human M2 muscarinic acetylcholine receptor

    K. Suzuki , K. Katayama , R. Suno , Y.Sumii , N. Shibata and H. Kandori

    The 58th Annual Meeting of the Biophysical Society of Japan  2020.09  -  2020.09 

  • Importance of the C-terminal region in cation channelrhodopsin Ts_Rh3

    R. Tashiro, K. Sushmita, S. Kateriya, H. Kandori and S. P. Tsunoda

    The 58th Annual Meeting of the Biophysical Society of Japan  2020.09  -  2020.09 

  • Mapping of the local environmental changes in proteins by FTIR spectroscopy with aspartic acid scanning

    M. Hashimoto, K. Katayama, M. Singh, Y. Furutani and H. Kandori

    The 58th Annual Meeting of the Biophysical Society of Japan  2020.09  -  2020.09 

  • Photochemical dynamics of a primate blue-sensitive pigment by spectroscopic study

    S. Hanai, K. Katayama, T. Sasaki, H. Imai and H. Kandori

    The 58th Annual Meeting of the Biophysical Society of Japan  2020.09  -  2020.09 

  • Elucidation of the repair mechanism of (6-4) photolyase by low-temperature FTIR spectroscopy

    K. Maeda, M. Kumagai, D. Yamada, Y. Terai, J. Yamamoto and H. kandori

    The 58th Annual Meeting of the Biophysical Society of Japan  2020.09  -  2020.09 

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Industrial Property

  • Proton pump and its applications

    特願 特願2016-173556 

    Proton pump and its applications